3D structure

PDB id
6VZ5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
8.9 Å

Loop

Sequence
CGAAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6VZ5_095 not in the Motif Atlas
Homologous match to HL_5J7L_191
Geometric discrepancy: 0.0762
The information below is about HL_5J7L_191
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

6VZ5|1|a|C|2374
6VZ5|1|a|G|2375
6VZ5|1|a|A|2376
6VZ5|1|a|A|2377
6VZ5|1|a|A|2378
6VZ5|1|a|G|2379

Current chains

Chain a
23S rRNA

Nearby chains

Chain x
50S ribosomal protein L18

Coloring options:


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