HL_6VZJ_049

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

6VZJ|1|a|G|386, 6VZJ|1|a|G|389

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VZJ_049 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.074

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6VZJ|1|a|A|382
6VZJ|1|a|C|383
6VZJ|1|a|A|384
6VZJ|1|a|C|385
6VZJ|1|a|G|386
6VZJ|1|a|U|387
6VZJ|1|a|G|388
6VZJ|1|a|G|389
6VZJ|1|a|U|390
6VZJ|1|a|A|391
6VZJ|1|a|U|392

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28