HL_6W2T_004

3D structure

PDB id

6W2T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.36 Å

Loop

Sequence

CGCUCAGGUACAGUAG

Length

16 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W2T_004 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3857

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

6W2T|1|A|C|531
6W2T|1|A|G|532
6W2T|1|A|C|533
6W2T|1|A|U|534
6W2T|1|A|C|535
6W2T|1|A|A|536
6W2T|1|A|G|537
6W2T|1|A|G|538
6W2T|1|A|U|539
6W2T|1|A|A|540
6W2T|1|A|C|541
6W2T|1|A|A|542
6W2T|1|A|G|543
6W2T|1|A|U|544
6W2T|1|A|A|545
6W2T|1|A|G|546

Current chains

Chain A

CrPV 5'-UTR IRES

Nearby chains

Chain 2

Eukaryotic translation initiation factor 3 subunit C

Chain 5

Eukaryotic translation initiation factor 3 subunit H