HL_6W2T_014
3D structure
- PDB id
- 6W2T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.36 Å
Loop
- Sequence
- UCAGGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6W2T_014 not in the Motif Atlas
- Homologous match to HL_4V88_194
- Geometric discrepancy: 0.1599
- The information below is about HL_4V88_194
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50142.3
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6W2T|1|a|U|416
6W2T|1|a|C|417
6W2T|1|a|A|418
6W2T|1|a|G|419
6W2T|1|a|G|420
6W2T|1|a|G|421
Current chains
- Chain a
- 18S rRNA
Nearby chains
- Chain D
- uS5
- Chain K
- uS4
- Chain M
- uS17
- Chain X
- uS8
- Chain Y
- uS12
Coloring options: