HL_6W2T_015
3D structure
- PDB id
- 6W2T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Cricket Paralysis Virus 5-UTR IRES (CrPV 5-UTR-IRES) bound to the small ribosomal subunit in the closed state (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.36 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 6W2T|1|a|C|450, 6W2T|1|a|G|451
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6W2T_015 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.1003
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6W2T|1|a|C|441
6W2T|1|a|C|442
6W2T|1|a|U|443
6W2T|1|a|G|444
6W2T|1|a|A|445
6W2T|1|a|G|446
6W2T|1|a|A|447
6W2T|1|a|A|448
6W2T|1|a|A|449
6W2T|1|a|C|450
6W2T|1|a|G|451
6W2T|1|a|G|452
Current chains
- Chain a
- 18S rRNA
Nearby chains
- Chain F
- eS4
- Chain H
- eS6
- Chain J
- eS8
- Chain Z
- eS24
Coloring options: