HL_6W6L_013

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

CUUGGGAAUG

Length

10 nucleotides

Bulged bases

6W6L|1|t|G|288, 6W6L|1|t|A|289, 6W6L|1|t|A|290

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W6L_013 not in the Motif Atlas

Homologous match to HL_8C3A_008

Geometric discrepancy: 0.1464

The information below is about HL_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6W6L|1|t|C|283
6W6L|1|t|U|284
6W6L|1|t|U|285
6W6L|1|t|G|286
6W6L|1|t|G|287
6W6L|1|t|G|288
6W6L|1|t|A|289
6W6L|1|t|A|290
6W6L|1|t|U|291
6W6L|1|t|G|292

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain M

60S ribosomal protein L13

Chain O

60S ribosomal protein L15

Chain b

60S ribosomal protein L27a

Chain p

60S ribosomal protein L36a