HL_6W6L_027

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

GCCGCGCC

Length

8 nucleotides

Bulged bases

6W6L|1|t|C|1467

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W6L_027 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.2855

The information below is about HL_6VMY_004

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

6W6L|1|t|G|1461
6W6L|1|t|C|1462
6W6L|1|t|C|1463
6W6L|1|t|G|1464
6W6L|1|t|C|1465
6W6L|1|t|G|1466
6W6L|1|t|C|1467
6W6L|1|t|C|1468

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain M

60S ribosomal protein L13

Chain j

60S ribosomal protein L36