HL_6W6L_031

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

6W6L|1|t|C|1658, 6W6L|1|t|A|1661

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W6L_031 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.2805

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6W6L|1|t|C|1657
6W6L|1|t|C|1658
6W6L|1|t|U|1659
6W6L|1|t|C|1660
6W6L|1|t|A|1661
6W6L|1|t|G|1662

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain b

60S ribosomal protein L27a

Chain c

60S ribosomal protein L29

Chain p

60S ribosomal protein L36a