HL_6W6L_035

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

GGAUGAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W6L_035 not in the Motif Atlas

Homologous match to HL_5TBW_026

Geometric discrepancy: 0.1959

The information below is about HL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_44398.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6W6L|1|t|G|1867
6W6L|1|t|G|1868
6W6L|1|t|A|1869
6W6L|1|t|U|1870
6W6L|1|t|G|1871
6W6L|1|t|A|1872
6W6L|1|t|A|1873
6W6L|1|t|C|1874

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain E

5S ribosomal RNA; 5S rRNA

Chain f

60S ribosomal protein L32

Chain g

60S ribosomal protein L35a