HL_6W6L_039
3D structure
- PDB id
- 6W6L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ribosome-TMCO1 translocon
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.84 Å
Loop
- Sequence
- ACGAGAACU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6W6L_039 not in the Motif Atlas
- Homologous match to HL_5TBW_031
- Geometric discrepancy: 0.1529
- The information below is about HL_5TBW_031
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
6W6L|1|t|A|2355
6W6L|1|t|C|2356
6W6L|1|t|G|2357
6W6L|1|t|A|2358
6W6L|1|t|G|2359
6W6L|1|t|A|2360
6W6L|1|t|A|2361
6W6L|1|t|C|2362
6W6L|1|t|U|2363
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain 7
- Coiled-coil domain-containing protein 47
- Chain Q
- 60S ribosomal protein L17
- Chain S
- 60S ribosomal protein L19
- Chain e
- 60S ribosomal protein L31
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