HL_6W6L_058

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

6W6L|1|t|A|3731

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W6L_058 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.2018

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6W6L|1|t|G|3728
6W6L|1|t|U|3729
6W6L|1|t|A|3730
6W6L|1|t|A|3731
6W6L|1|t|C|3732
6W6L|1|t|U|3733
6W6L|1|t|A|3734
6W6L|1|t|U|3735
6W6L|1|t|G|3736
6W6L|1|t|A|3737
6W6L|1|t|C|3738

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain u

Transfer RNA; tRNA