HL_6W6L_080

3D structure

PDB id

6W6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ribosome-TMCO1 translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.84 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

6W6L|1|t|U|4984, 6W6L|1|t|C|4985

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W6L_080 not in the Motif Atlas

Geometric match to HL_5TBW_018

Geometric discrepancy: 0.3295

The information below is about HL_5TBW_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

6W6L|1|t|C|4979
6W6L|1|t|U|4980
6W6L|1|t|C|4981
6W6L|1|t|C|4982
6W6L|1|t|C|4983
6W6L|1|t|U|4984
6W6L|1|t|C|4985
6W6L|1|t|G|4986

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain V

60S ribosomal protein L22