HL_6W6P_055

3D structure

PDB id

6W6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

MultiBody Refinement of 70S Ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGUAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W6P_055 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.1408

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

6W6P|1|A|U|2338
6W6P|1|A|G|2339
6W6P|1|A|U|2340
6W6P|1|A|A|2341
6W6P|1|A|A|2342
6W6P|1|A|A|2343
6W6P|1|A|G|2344
6W6P|1|A|G|2345

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L5

Chain N

50S ribosomal protein L16

Chain X

50S ribosomal protein L27