HL_6W6P_104

3D structure

PDB id

6W6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

MultiBody Refinement of 70S Ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUGGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W6P_104 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.4547

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6W6P|1|A|G|2318
6W6P|1|A|U|2319
6W6P|1|A|U|2320
6W6P|1|A|G|2321
6W6P|1|A|G|2322
6W6P|1|A|A|2323
6W6P|1|A|A|2324
6W6P|1|A|A|2325
6W6P|1|A|U|2326

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L5