HL_6W77_006

3D structure

PDB id

6W77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-Inactivated-high-Mg2+ Class A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

6W77|1|A|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W77_006 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1582

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6W77|1|A|G|259
6W77|1|A|G|260
6W77|1|A|U|261
6W77|1|A|A|262
6W77|1|A|A|263
6W77|1|A|C|264
6W77|1|A|G|265
6W77|1|A|G|266
6W77|1|A|C|267

Current chains

Chain A

RNA (1519-MER)

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20