HL_6W77_008

3D structure

PDB id

6W77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-Inactivated-high-Mg2+ Class A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W77_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1314

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6W77|1|A|A|320
6W77|1|A|A|321
6W77|1|A|C|322
6W77|1|A|U|323
6W77|1|A|G|324
6W77|1|A|A|325
6W77|1|A|G|326
6W77|1|A|A|327
6W77|1|A|C|328
6W77|1|A|A|329
6W77|1|A|C|330
6W77|1|A|G|331
6W77|1|A|G|332
6W77|1|A|U|333

Current chains

Chain A

RNA (1519-MER)

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20