HL_6W77_026

3D structure

PDB id

6W77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-Inactivated-high-Mg2+ Class A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUCCGGCC

Length

9 nucleotides

Bulged bases

6W77|1|A|C|1136

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W77_026 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.2773

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

6W77|1|A|G|1133
6W77|1|A|G|1134
6W77|1|A|U|1135
6W77|1|A|C|1136
6W77|1|A|C|1137
6W77|1|A|G|1138
6W77|1|A|G|1139
6W77|1|A|C|1140
6W77|1|A|C|1141

Current chains

Chain A

RNA (1519-MER)

Nearby chains

Chain I

30S ribosomal protein S9