HL_6W7N_032

3D structure

PDB id

6W7N (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-Inactive-low-Mg2+ Class A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCGCAAGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W7N_032 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.255

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6W7N|1|A|U|185
6W7N|1|A|C|186
6W7N|1|A|G|187
6W7N|1|A|C|188
6W7N|1|A|A|189
6W7N|1|A|A|190
6W7N|1|A|G|191
6W7N|1|A|A|192

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20