HL_6W7W_015

3D structure

PDB id

6W7W (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-Inactive-low-Mg2+ Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGAAUGGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6W7W_015 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3486

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

6W7W|1|2|A|673
6W7W|1|2|G|674
6W7W|1|2|A|675
6W7W|1|2|A|676
6W7W|1|2|U|677
6W7W|1|2|G|713
6W7W|1|2|G|714
6W7W|1|2|A|715
6W7W|1|2|A|716
6W7W|1|2|U|717

Current chains

Chain 2

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S6