HL_6WDB_075

3D structure

PDB id

6WDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

6WDB|1|3|U|209, 6WDB|1|3|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDB_075 not in the Motif Atlas

Geometric match to HL_4WSB_001

Geometric discrepancy: 0.3628

The information below is about HL_4WSB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

6WDB|1|3|C|206
6WDB|1|3|C|207
6WDB|1|3|U|208
6WDB|1|3|U|209
6WDB|1|3|C|210
6WDB|1|3|G|211
6WDB|1|3|G|212
6WDB|1|3|G|213

Current chains

Chain 3

16S ribosomal RNA

Nearby chains