HL_6WDB_076

3D structure

PDB id

6WDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

6WDB|1|3|G|266

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDB_076 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1254

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6WDB|1|3|G|259
6WDB|1|3|G|260
6WDB|1|3|U|261
6WDB|1|3|A|262
6WDB|1|3|A|263
6WDB|1|3|C|264
6WDB|1|3|G|265
6WDB|1|3|G|266
6WDB|1|3|C|267

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain V

30S ribosomal protein S17

Chain Y

30S ribosomal protein S20