HL_6WDB_088

3D structure

PDB id

6WDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

6WDB|1|3|U|842, 6WDB|1|3|G|844, 6WDB|1|3|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDB_088 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3787

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6WDB|1|3|C|840
6WDB|1|3|C|841
6WDB|1|3|U|842
6WDB|1|3|U|843
6WDB|1|3|G|844
6WDB|1|3|A|845
6WDB|1|3|G|846

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain W

30S ribosomal protein S18