3D structure

PDB id
6WDB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
CCUUGAG
Length
7 nucleotides
Bulged bases
6WDB|1|3|U|842, 6WDB|1|3|G|844, 6WDB|1|3|A|845
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6WDB_088 not in the Motif Atlas
Geometric match to HL_8C3A_022
Geometric discrepancy: 0.3787
The information below is about HL_8C3A_022
Detailed Annotation
Externally structured
Broad Annotation
Externally structured
Motif group
HL_96426.1
Basepair signature
cWW-F
Number of instances in this motif group
4

Unit IDs

6WDB|1|3|C|840
6WDB|1|3|C|841
6WDB|1|3|U|842
6WDB|1|3|U|843
6WDB|1|3|G|844
6WDB|1|3|A|845
6WDB|1|3|G|846

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain W
30S ribosomal protein S18

Coloring options:


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