HL_6WDC_012

3D structure

PDB id

6WDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6WDC|1|1|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDC_012 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.1739

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6WDC|1|1|G|410
6WDC|1|1|G|411
6WDC|1|1|A|412
6WDC|1|1|C|413
6WDC|1|1|C|414
6WDC|1|1|A|415
6WDC|1|1|U|416
6WDC|1|1|C|417

Current chains

Chain 1

23S ribosomal RNA

Nearby chains