HL_6WDC_055

3D structure

PDB id

6WDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDC_055 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.1544

The information below is about HL_5J7L_189

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_12078.6

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

28

Unit IDs

6WDC|1|1|U|2324
6WDC|1|1|G|2325
6WDC|1|1|C|2326
6WDC|1|1|A|2327
6WDC|1|1|A|2328
6WDC|1|1|U|2329
6WDC|1|1|G|2330
6WDC|1|1|G|2331

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain m

50S ribosomal protein L16

Chain w

50S ribosomal protein L27