3D structure

PDB id
6WDC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
CUGAAUGGAAGG
Length
12 nucleotides
Bulged bases
6WDC|1|1|A|2406
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6WDC_058 not in the Motif Atlas
Geometric match to HL_3RG5_006
Geometric discrepancy: 0.3668
The information below is about HL_3RG5_006
Detailed Annotation
tRNA anticodon loop
Broad Annotation
tRNA anticodon loop
Motif group
HL_04259.3
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

6WDC|1|1|C|2403
6WDC|1|1|U|2404
6WDC|1|1|G|2405
6WDC|1|1|A|2406
6WDC|1|1|A|2407
6WDC|1|1|U|2408
6WDC|1|1|G|2409
6WDC|1|1|G|2410
6WDC|1|1|A|2411
6WDC|1|1|A|2412
6WDC|1|1|G|2413
6WDC|1|1|G|2414

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain l
50S ribosomal protein L15

Coloring options:


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