HL_6WDC_068

3D structure

PDB id

6WDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure IV-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDC_068 not in the Motif Atlas

Homologous match to HL_5J7L_202

Geometric discrepancy: 0.1431

The information below is about HL_5J7L_202

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_85603.1

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

304

Unit IDs

6WDC|1|1|A|2856
6WDC|1|1|G|2857
6WDC|1|1|C|2858
6WDC|1|1|G|2859
6WDC|1|1|A|2860
6WDC|1|1|U|2861

Current chains

Chain 1

23S ribosomal RNA

Nearby chains