HL_6WDH_054

3D structure

PDB id

6WDH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure IV-B1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDH_054 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.2374

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6WDH|1|1|G|2303
6WDH|1|1|G|2304
6WDH|1|1|U|2305
6WDH|1|1|C|2306
6WDH|1|1|G|2307
6WDH|1|1|G|2308
6WDH|1|1|A|2309
6WDH|1|1|C|2310
6WDH|1|1|A|2311
6WDH|1|1|U|2312
6WDH|1|1|C|2313

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L5