HL_6WDI_022

3D structure

PDB id

6WDI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure IV-B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUGAAAGGC

Length

9 nucleotides

Bulged bases

6WDI|1|1|A|781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDI_022 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.2366

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6WDI|1|1|G|778
6WDI|1|1|U|779
6WDI|1|1|G|780
6WDI|1|1|A|781
6WDI|1|1|A|782
6WDI|1|1|A|783
6WDI|1|1|G|784
6WDI|1|1|G|785
6WDI|1|1|C|786

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2