3D structure

PDB id
6WDJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A1)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CGGUGAAAUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6WDJ_085 not in the Motif Atlas
Homologous match to HL_4LFB_015
Geometric discrepancy: 0.1566
The information below is about HL_4LFB_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.5
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

6WDJ|1|3|C|689
6WDJ|1|3|G|690
6WDJ|1|3|G|691
6WDJ|1|3|U|692
6WDJ|1|3|G|693
6WDJ|1|3|A|694
6WDJ|1|3|A|695
6WDJ|1|3|A|696
6WDJ|1|3|U|697
6WDJ|1|3|G|698

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain 4
mRNA
Chain 6
Transfer RNA; tRNA
Chain L
30S ribosomal protein S7
Chain P
30S ribosomal protein S11
Chain Z
30S ribosomal protein S21

Coloring options:


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