HL_6WDR_005

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

6WDR|1|2|U|512

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDR_005 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.1552

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6WDR|1|2|G|506
6WDR|1|2|A|507
6WDR|1|2|U|508
6WDR|1|2|G|509
6WDR|1|2|A|510
6WDR|1|2|U|511
6WDR|1|2|U|512
6WDR|1|2|C|513

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4-A

Chain G

40S ribosomal protein S6-A

Chain L

40S ribosomal protein S11-A