HL_6WDR_019

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

6WDR|1|2|U|1079

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDR_019 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.2824

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6WDR|1|2|A|1075
6WDR|1|2|U|1076
6WDR|1|2|U|1077
6WDR|1|2|U|1078
6WDR|1|2|U|1079
6WDR|1|2|G|1080
6WDR|1|2|U|1081
6WDR|1|2|U|1082
6WDR|1|2|G|1083
6WDR|1|2|G|1084
6WDR|1|2|U|1085
6WDR|1|2|U|1086
6WDR|1|2|U|1087
6WDR|1|2|C|1088
6WDR|1|2|U|1089

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6-A

Chain L

40S ribosomal protein S11-A