HL_6WDR_024

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

6WDR|1|2|A|1348

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDR_024 not in the Motif Atlas

Homologous match to HL_4V88_212

Geometric discrepancy: 0.1939

The information below is about HL_4V88_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6WDR|1|2|G|1340
6WDR|1|2|A|1341
6WDR|1|2|C|1342
6WDR|1|2|U|1343
6WDR|1|2|C|1344
6WDR|1|2|A|1345
6WDR|1|2|A|1346
6WDR|1|2|C|1347
6WDR|1|2|A|1348
6WDR|1|2|C|1349

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain U

40S ribosomal protein S20

Chain f

Ubiquitin-40S ribosomal protein S31