HL_6WDR_039

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

6WDR|1|2|G|1011

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WDR_039 not in the Motif Atlas

Homologous match to HL_8C3A_208

Geometric discrepancy: 0.1439

The information below is about HL_8C3A_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6WDR|1|2|U|1010
6WDR|1|2|G|1011
6WDR|1|2|U|1012
6WDR|1|2|U|1013
6WDR|1|2|C|1014
6WDR|1|2|A|1015
6WDR|1|2|A|1016
6WDR|1|2|A|1017
6WDR|1|2|G|1018

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4-A

Chain J

40S ribosomal protein S9-A

Chain Y

40S ribosomal protein S24-A