HL_8C3A_208

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases (A, C, G, U)

750G

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46766.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8C3A|1|CM|U|749
8C3A|1|CM|G|750
8C3A|1|CM|U|751
8C3A|1|CM|U|752
8C3A|1|CM|C|753
8C3A|1|CM|A|754
8C3A|1|CM|A|755
8C3A|1|CM|A|756
8C3A|1|CM|G|757

Current chains

Chain CM

18S

Nearby chains

Chain CR

40S ribosomal protein S4

Chain CW

Ribosomal protein S4

Chain DL

40S ribosomal protein S24