HL_6WNT_039

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

6WNT|1|4|C|1664

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNT_039 not in the Motif Atlas

Geometric match to HL_8C3A_196

Geometric discrepancy: 0.2957

The information below is about HL_8C3A_196

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

6WNT|1|4|C|1661
6WNT|1|4|U|1662
6WNT|1|4|A|1663
6WNT|1|4|C|1664
6WNT|1|4|G|1665
6WNT|1|4|G|1666

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains