HL_6WNT_040

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGG

Length

4 nucleotides

Bulged bases

6WNT|1|4|A|1694

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNT_040 not in the Motif Atlas

Geometric match to HL_4V9F_041

Geometric discrepancy: 0.0917

The information below is about HL_4V9F_041

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6WNT|1|4|C|1693
6WNT|1|4|A|1694
6WNT|1|4|G|1695
6WNT|1|4|G|1696

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2