HL_6WNT_044

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

6WNT|1|4|U|1857, 6WNT|1|4|C|1860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNT_044 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3725

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

6WNT|1|4|C|1855
6WNT|1|4|C|1856
6WNT|1|4|U|1857
6WNT|1|4|C|1858
6WNT|1|4|G|1859
6WNT|1|4|C|1860
6WNT|1|4|G|1861

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains