HL_6WNT_046

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

6WNT|1|4|A|1908, 6WNT|1|4|U|1909, 6WNT|1|4|U|1910, 6WNT|1|4|A|1914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNT_046 not in the Motif Atlas

Geometric match to HL_4WF9_043

Geometric discrepancy: 0.1119

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6WNT|1|4|U|1905
6WNT|1|4|U|1906
6WNT|1|4|U|1907
6WNT|1|4|A|1908
6WNT|1|4|U|1909
6WNT|1|4|U|1910
6WNT|1|4|A|1911
6WNT|1|4|A|1912
6WNT|1|4|A|1913
6WNT|1|4|A|1914
6WNT|1|4|A|1915

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain b

50S ribosomal protein L2