HL_6WNT_051

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

6WNT|1|4|A|2158, 6WNT|1|4|A|2159, 6WNT|1|4|G|2160

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNT_051 not in the Motif Atlas

Geometric match to HL_4WF9_047

Geometric discrepancy: 0.1361

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

6WNT|1|4|G|2155
6WNT|1|4|U|2156
6WNT|1|4|G|2157
6WNT|1|4|A|2158
6WNT|1|4|A|2159
6WNT|1|4|G|2160
6WNT|1|4|A|2161
6WNT|1|4|U|2162
6WNT|1|4|G|2163
6WNT|1|4|C|2164

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L32

Chain c

50S ribosomal protein L3

Chain r

50S ribosomal protein L21