HL_6WNT_054

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6WNT|1|4|G|2378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNT_054 not in the Motif Atlas

Geometric match to HL_4LFB_002

Geometric discrepancy: 0.3798

The information below is about HL_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6WNT|1|4|C|2376
6WNT|1|4|U|2377
6WNT|1|4|G|2378
6WNT|1|4|G|2379
6WNT|1|4|G|2380
6WNT|1|4|G|2381
6WNT|1|4|C|2382
6WNT|1|4|G|2383
6WNT|1|4|G|2384

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain w

50S ribosomal protein L27