HL_6WNT_055

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

6WNT|1|4|A|2396, 6WNT|1|4|C|2403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNT_055 not in the Motif Atlas

Geometric match to HL_7RQB_054

Geometric discrepancy: 0.1012

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6WNT|1|4|C|2392
6WNT|1|4|U|2393
6WNT|1|4|A|2394
6WNT|1|4|A|2395
6WNT|1|4|A|2396
6WNT|1|4|G|2397
6WNT|1|4|A|2398
6WNT|1|4|G|2399
6WNT|1|4|U|2400
6WNT|1|4|A|2401
6WNT|1|4|A|2402
6WNT|1|4|C|2403
6WNT|1|4|G|2404

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain w

50S ribosomal protein L27