HL_6WNT_060

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

6WNT|1|4|A|2534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNT_060 not in the Motif Atlas

Geometric match to HL_5J7L_192

Geometric discrepancy: 0.125

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6WNT|1|4|U|2532
6WNT|1|4|G|2533
6WNT|1|4|A|2534
6WNT|1|4|A|2535
6WNT|1|4|U|2536
6WNT|1|4|G|2537
6WNT|1|4|G|2538
6WNT|1|4|A|2539
6WNT|1|4|A|2540
6WNT|1|4|G|2541

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L15