HL_6WNT_067

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6WNT|1|4|G|2879, 6WNT|1|4|C|2883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNT_067 not in the Motif Atlas

Geometric match to HL_5J7L_199

Geometric discrepancy: 0.0957

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6WNT|1|4|C|2873
6WNT|1|4|U|2874
6WNT|1|4|G|2875
6WNT|1|4|A|2876
6WNT|1|4|A|2877
6WNT|1|4|A|2878
6WNT|1|4|G|2879
6WNT|1|4|C|2880
6WNT|1|4|A|2881
6WNT|1|4|U|2882
6WNT|1|4|C|2883
6WNT|1|4|U|2884
6WNT|1|4|A|2885
6WNT|1|4|A|2886
6WNT|1|4|G|2887

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36

Chain f

50S ribosomal protein L6

Chain j

50S ribosomal protein L13