HL_6WNT_068

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

6WNT|1|4|A|2928

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNT_068 not in the Motif Atlas

Geometric match to HL_7A0S_023

Geometric discrepancy: 0.3607

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

6WNT|1|4|C|2923
6WNT|1|4|U|2924
6WNT|1|4|U|2925
6WNT|1|4|U|2926
6WNT|1|4|A|2927
6WNT|1|4|A|2928
6WNT|1|4|G|2929

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains