HL_6WNV_042

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

6WNV|1|4|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNV_042 not in the Motif Atlas

Geometric match to HL_5J7L_145

Geometric discrepancy: 0.1422

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6WNV|1|4|A|382
6WNV|1|4|C|383
6WNV|1|4|A|384
6WNV|1|4|C|385
6WNV|1|4|G|386
6WNV|1|4|U|387
6WNV|1|4|G|388
6WNV|1|4|G|389
6WNV|1|4|U|390
6WNV|1|4|A|391
6WNV|1|4|U|392

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain x

50S ribosomal protein L28