HL_6WNW_043

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

6WNW|1|4|G|386, 6WNW|1|4|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WNW_043 not in the Motif Atlas

Geometric match to HL_5J7L_145

Geometric discrepancy: 0.1578

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6WNW|1|4|A|382
6WNW|1|4|C|383
6WNW|1|4|A|384
6WNW|1|4|C|385
6WNW|1|4|G|386
6WNW|1|4|U|387
6WNW|1|4|G|388
6WNW|1|4|G|389
6WNW|1|4|U|390
6WNW|1|4|A|391
6WNW|1|4|U|392

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain x

50S ribosomal protein L28