HL_6WOO_003

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

6WOO|1|2|U|157, 6WOO|1|2|U|158

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_003 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.2977

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6WOO|1|2|G|153
6WOO|1|2|U|154
6WOO|1|2|A|155
6WOO|1|2|A|156
6WOO|1|2|U|157
6WOO|1|2|U|158
6WOO|1|2|C|159

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

eIF5B

Chain GG

eS6

Chain YY

eS24