HL_6WOO_009

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_009 not in the Motif Atlas

Homologous match to HL_4V88_194

Geometric discrepancy: 0.1364

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6WOO|1|2|U|367
6WOO|1|2|A|368
6WOO|1|2|A|369
6WOO|1|2|G|370
6WOO|1|2|G|371
6WOO|1|2|G|372

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain CC

uS5

Chain JJ

uS4

Chain LL

uS17

Chain WW

uS8

Chain XX

uS12