HL_6WOO_010
3D structure
- PDB id
- 6WOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 6WOO|1|2|G|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6WOO_010 not in the Motif Atlas
- Homologous match to HL_4V88_195
- Geometric discrepancy: 0.0783
- The information below is about HL_4V88_195
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6WOO|1|2|C|392
6WOO|1|2|C|393
6WOO|1|2|U|394
6WOO|1|2|G|395
6WOO|1|2|A|396
6WOO|1|2|G|397
6WOO|1|2|A|398
6WOO|1|2|A|399
6WOO|1|2|A|400
6WOO|1|2|C|401
6WOO|1|2|G|402
6WOO|1|2|G|403
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain EE
- eS4
- Chain GG
- eS6
- Chain II
- eS8
- Chain YY
- eS24
Coloring options: