HL_6WOO_012

3D structure

PDB id

6WOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of yeast 80S ribosome with Met-tRNAiMet, eIF5B, and GDP

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

6WOO|1|2|A|451, 6WOO|1|2|U|453, 6WOO|1|2|C|454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6WOO_012 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.2496

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6WOO|1|2|U|449
6WOO|1|2|A|450
6WOO|1|2|A|451
6WOO|1|2|U|452
6WOO|1|2|U|453
6WOO|1|2|C|454
6WOO|1|2|A|455

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain EE

eS4

Chain YY

eS24